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- ✅ Thread optional `phase` param into `db/sessions.ts::createSession()`
- ✅ Thread optional `phase` param into `ipc/handlers.ts` sessions:create handler
- ✅ Thread optional `phase` param into `preload.ts` createSession API
- ✅ Update Plan phase system prompt to gracefully handle missing research.md
- ✅ Update Implement phase system prompt to gracefully handle missing plan.md
- ✅ Create `renderer/src/components/NewSessionModal.tsx`
- ✅ Update `App.tsx`: add modal state, split handler, add modal JSX
- ✅ Add modal CSS to `globals.css`
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- Add MCP protocol client for tool discovery (initialize + tools/list)
- Show discovered tools in settings UI with enable/disable checkboxes
- Build explicit allowedTools list from enabled MCP tools
- Remove bypassPermissions hack - now uses proper tool allowlisting
- Format: mcp__servername__toolname for SDK allowedTools
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- Add McpSettings component with add/edit/delete server UI
- Support stdio (command + args + env) and sse/http (url + headers) transports
- Array builder for args, key-value builder for env vars and headers
- Pass mcpServers config to SDK query() calls
- Store config as JSON in settings table
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- Add Model settings section with free-text input for model override
- Pass configured model through to SDK query() calls
- Display active model badge in ActionBar next to token usage
- Seed model state from DB on mount, update from system:init events
- Empty/unset value uses SDK default (no breaking change)
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- ✅ **1 — `git.ts`:** Add exported `getCurrentBranch` helper after `ensureGitRepo`
- ✅ **2a — `ipc/handlers.ts`:** Update git import to include `ensureGitRepo` and `getCurrentBranch`
- ✅ **2b — `ipc/handlers.ts`:** Replace `workflow:advance` implement-phase block with branching-toggle logic
- ✅ **3 — `GitSettings.tsx`:** Create new settings component with pill toggle
- ✅ **4 — `SettingsPage.tsx`:** Add `"git"` section type, import, nav item, content render; fix both unicode glyphs
- ✅ **5 — `globals.css`:** Append toggle-row + pill toggle + maximize-btn CSS
- ✅ **6 — `index.ts`:** Add `ipcMain` to import; add `window:toggleMaximize` handler + maximize/unmaximize events inside `createWindow()`
- ✅ **7 — `preload.ts`:** Add `toggleMaximize` + `onWindowMaximized` to interface and `api` object
- ✅ **8 — `Header.tsx`:** Add `isMaximized` state + effect + maximize button in JSX
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- ✅ **1. `src/main/db/schema.ts`** — add `settings` table to `initSchema`
- ✅ **2. `src/main/db/settings.ts`** — create file with `getSetting`, `getSettings`, `setSetting`, `deleteSetting`
- ✅ **3. `src/main/claude/phases.ts`** — add `customSystemPrompt?` param to `getPhaseConfig`; add `getDefaultSystemPromptTemplate` export
- ✅ **4. `src/main/claude/index.ts`** — import `getSetting`; load custom prompt in `sendMessage`; pass to `getPhaseConfig`
- ✅ **5. `src/main/ipc/handlers.ts`** — import `settingsDb` + `getDefaultSystemPromptTemplate`; register `settings:get`, `settings:set`, `settings:delete`, `settings:getDefaultPrompts`
- ✅ **6. `src/main/preload.ts`** — add `getSettings`, `setSetting`, `deleteSetting`, `getDefaultSystemPrompts` to interface + api object
- ✅ **7. `renderer/src/styles/globals.css`** — append all new CSS rules
- ✅ **8. `renderer/src/components/settings/SystemPromptsSettings.tsx`** — create file (new directory)
- ✅ **9. `renderer/src/components/SettingsPage.tsx`** — create file
- ✅ **10. `renderer/src/components/Header.tsx`** — add `onOpenSettings` prop + ⚙ button
- ✅ **11. `renderer/src/App.tsx`** — add `showSettings` state; import + render `<SettingsPage>`; pass `onOpenSettings` to Header
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